STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF11618.1Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
AKF04497.1
Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.745
AKF10376.1
Transcriptional activator MetR; Belongs to the LysR transcriptional regulatory family.
  
     0.713
AKF06939.1
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.707
AKF05504.1
Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.644
AKF04556.1
Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.626
AKF11620.1
Hypothetical protein.
       0.533
AKF11617.1
Tryptophan synthase alpha chain.
       0.528
AKF11621.1
Hypothetical protein.
       0.433
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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