Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL39294.1 | hemC | RS81_02137 | RS81_02138 | Hypothetical protein. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | 0.857 |
KJL39294.1 | hemE | RS81_02137 | RS81_02135 | Hypothetical protein. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.732 |
KJL39294.1 | hemH | RS81_02137 | RS81_00034 | Hypothetical protein. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.984 |
KJL39294.1 | hemY_1 | RS81_02137 | RS81_01673 | Hypothetical protein. | Protoporphyrinogen oxidase. | 0.613 |
KJL39294.1 | hemY_2 | RS81_02137 | RS81_02136 | Hypothetical protein. | Protoporphyrinogen oxidase. | 0.849 |
KJL40088.1 | hemC | RS81_01677 | RS81_02138 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | 0.997 |
KJL40088.1 | hemE | RS81_01677 | RS81_02135 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.909 |
KJL40088.1 | hemH | RS81_01677 | RS81_00034 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.526 |
KJL40088.1 | hemY_1 | RS81_01677 | RS81_01673 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Protoporphyrinogen oxidase. | 0.588 |
crtB_1 | crtB_2 | RS81_00751 | RS81_00798 | All-trans-phytoene synthase. | All-trans-phytoene synthase. | 0.971 |
crtB_1 | hemY_1 | RS81_00751 | RS81_01673 | All-trans-phytoene synthase. | Protoporphyrinogen oxidase. | 0.586 |
crtB_1 | hemY_2 | RS81_00751 | RS81_02136 | All-trans-phytoene synthase. | Protoporphyrinogen oxidase. | 0.586 |
crtB_2 | crtB_1 | RS81_00798 | RS81_00751 | All-trans-phytoene synthase. | All-trans-phytoene synthase. | 0.971 |
crtB_2 | hemY_1 | RS81_00798 | RS81_01673 | All-trans-phytoene synthase. | Protoporphyrinogen oxidase. | 0.586 |
crtB_2 | hemY_2 | RS81_00798 | RS81_02136 | All-trans-phytoene synthase. | Protoporphyrinogen oxidase. | 0.586 |
hemC | KJL39294.1 | RS81_02138 | RS81_02137 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | Hypothetical protein. | 0.857 |
hemC | KJL40088.1 | RS81_02138 | RS81_01677 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.997 |
hemC | hemE | RS81_02138 | RS81_02135 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.994 |
hemC | hemH | RS81_02138 | RS81_00034 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.810 |
hemC | hemN | RS81_02138 | RS81_02849 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | Oxygen-independent coproporphyrinogen-III oxidase 1; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.469 |
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