STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhjE_3Inner membrane metabolite transport protein YhjE. (460 aa)    
Predicted Functional Partners:
hpcE_2
Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase.
     0.645
mcbR
HTH-type transcriptional regulator McbR.
       0.551
xylG
2-hydroxymuconic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.492
bphC
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
     0.473
Your Current Organism:
Microbacterium ketosireducens
NCBI taxonomy Id: 92835
Other names: Aureibacterium ketoreductum, Aureobacterium ketoreductum, CIP 105732, DSM 12510, IFO 14548, JCM 12078, M. ketosireducens, NBRC 14548, VKM Ac-2082
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.