Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL37666.1 | KJL39054.1 | RS81_03424 | RS81_02148 | Hypothetical protein. | Uridine kinase. | 0.872 |
KJL37666.1 | gapA | RS81_03424 | RS81_03111 | Hypothetical protein. | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.535 |
KJL39054.1 | KJL37666.1 | RS81_02148 | RS81_03424 | Uridine kinase. | Hypothetical protein. | 0.872 |
KJL39054.1 | KJL39056.1 | RS81_02148 | RS81_02150 | Uridine kinase. | Hypothetical protein. | 0.792 |
KJL39054.1 | cdd | RS81_02148 | RS81_00149 | Uridine kinase. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.885 |
KJL39054.1 | cel5A | RS81_02148 | RS81_03252 | Uridine kinase. | Endoglucanase 5A. | 0.775 |
KJL39054.1 | cmk | RS81_02148 | RS81_01366 | Uridine kinase. | Cytidylate kinase. | 0.785 |
KJL39054.1 | gapA | RS81_02148 | RS81_03111 | Uridine kinase. | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.857 |
KJL39054.1 | pyrH | RS81_02148 | RS81_02302 | Uridine kinase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.791 |
KJL39054.1 | pyrR | RS81_02148 | RS81_02971 | Uridine kinase. | Bifunctional protein PyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.770 |
KJL39054.1 | truB | RS81_02148 | RS81_02149 | Uridine kinase. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.790 |
KJL39054.1 | upp | RS81_02148 | RS81_03172 | Uridine kinase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.945 |
KJL39056.1 | KJL39054.1 | RS81_02150 | RS81_02148 | Hypothetical protein. | Uridine kinase. | 0.792 |
KJL39056.1 | truB | RS81_02150 | RS81_02149 | Hypothetical protein. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.847 |
cdd | KJL39054.1 | RS81_00149 | RS81_02148 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Uridine kinase. | 0.885 |
cdd | cel5A | RS81_00149 | RS81_03252 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Endoglucanase 5A. | 0.785 |
cdd | gapA | RS81_00149 | RS81_03111 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.558 |
cdd | pyrR | RS81_00149 | RS81_02971 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Bifunctional protein PyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.427 |
cdd | upp | RS81_00149 | RS81_03172 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.675 |
cel5A | KJL39054.1 | RS81_03252 | RS81_02148 | Endoglucanase 5A. | Uridine kinase. | 0.775 |
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