STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vraRResponse regulator protein VraR. (213 aa)    
Predicted Functional Partners:
comP
Sensor histidine kinase ComP.
 
  0.970
degS_2
Signal transduction histidine-protein kinase/phosphatase DegS.
 
  0.913
liaS
Sensor histidine kinase LiaS.
 
  0.873
degS_3
Signal transduction histidine-protein kinase/phosphatase DegS.
 
  0.872
desK_5
Sensor histidine kinase DesK.
 
  0.867
desK_4
Sensor histidine kinase DesK.
  
  0.847
desK_6
Sensor histidine kinase DesK.
  
  0.814
KJL38729.1
Hypothetical protein.
       0.773
desK_2
Sensor histidine kinase DesK.
  
  0.761
desK_1
Sensor histidine kinase DesK.
  
  0.748
Your Current Organism:
Microbacterium ketosireducens
NCBI taxonomy Id: 92835
Other names: Aureibacterium ketoreductum, Aureobacterium ketoreductum, CIP 105732, DSM 12510, IFO 14548, JCM 12078, M. ketosireducens, NBRC 14548, VKM Ac-2082
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.