Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL37913.1 | alr_2 | RS81_02905 | RS81_02906 | Hypothetical protein. | Alanine racemase. | 0.538 |
KJL37913.1 | alr_3 | RS81_02905 | RS81_02907 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.543 |
ald | alr_1 | RS81_00634 | RS81_01506 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.947 |
ald | alr_2 | RS81_00634 | RS81_02906 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Alanine racemase. | 0.947 |
ald | alr_3 | RS81_00634 | RS81_02907 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.947 |
ald | tsaE | RS81_00634 | RS81_01505 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | 0.466 |
alr_1 | ald | RS81_01506 | RS81_00634 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.947 |
alr_1 | alr_2 | RS81_01506 | RS81_02906 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine racemase. | 0.892 |
alr_1 | alr_3 | RS81_01506 | RS81_02907 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.897 |
alr_1 | ddl | RS81_01506 | RS81_02351 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.966 |
alr_1 | murC | RS81_01506 | RS81_00020 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.502 |
alr_1 | murD | RS81_01506 | RS81_01436 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.532 |
alr_1 | murF | RS81_01506 | RS81_01434 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.967 |
alr_1 | pbpB | RS81_01506 | RS81_01433 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Penicillin-binding protein PbpB. | 0.502 |
alr_1 | tsaE | RS81_01506 | RS81_01505 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | 0.989 |
alr_2 | KJL37913.1 | RS81_02906 | RS81_02905 | Alanine racemase. | Hypothetical protein. | 0.538 |
alr_2 | ald | RS81_02906 | RS81_00634 | Alanine racemase. | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.947 |
alr_2 | alr_1 | RS81_02906 | RS81_01506 | Alanine racemase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.892 |
alr_2 | alr_3 | RS81_02906 | RS81_02907 | Alanine racemase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.989 |
alr_2 | ddl | RS81_02906 | RS81_02351 | Alanine racemase. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.940 |
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