Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL38081.1 | KJL38082.1 | RS81_03079 | RS81_03080 | Hypothetical protein. | Hypothetical protein. | 0.847 |
KJL38081.1 | KJL38083.1 | RS81_03079 | RS81_03081 | Hypothetical protein. | SURF1 family protein. | 0.847 |
KJL38082.1 | KJL38081.1 | RS81_03080 | RS81_03079 | Hypothetical protein. | Hypothetical protein. | 0.847 |
KJL38082.1 | KJL38083.1 | RS81_03080 | RS81_03081 | Hypothetical protein. | SURF1 family protein. | 0.847 |
KJL38083.1 | KJL38081.1 | RS81_03081 | RS81_03079 | SURF1 family protein. | Hypothetical protein. | 0.847 |
KJL38083.1 | KJL38082.1 | RS81_03081 | RS81_03080 | SURF1 family protein. | Hypothetical protein. | 0.847 |
KJL38083.1 | KJL39137.1 | RS81_03081 | RS81_02231 | SURF1 family protein. | Hypothetical protein. | 0.700 |
KJL38083.1 | aioB | RS81_03081 | RS81_03149 | SURF1 family protein. | Arsenite oxidase subunit AioB precursor. | 0.573 |
KJL38083.1 | ctaA | RS81_03081 | RS81_03098 | SURF1 family protein. | Heme A synthase. | 0.856 |
KJL38083.1 | ctaB | RS81_03081 | RS81_03100 | SURF1 family protein. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.753 |
KJL38083.1 | ctaC | RS81_03081 | RS81_03155 | SURF1 family protein. | Cytochrome c oxidase subunit 2 precursor. | 0.754 |
KJL38083.1 | ctaD | RS81_03081 | RS81_03154 | SURF1 family protein. | Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.667 |
KJL38083.1 | qcrC | RS81_03081 | RS81_03148 | SURF1 family protein. | Menaquinol-cytochrome c reductase cytochrome c subunit. | 0.633 |
KJL38083.1 | secY | RS81_03081 | RS81_01530 | SURF1 family protein. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.714 |
KJL39137.1 | KJL38083.1 | RS81_02231 | RS81_03081 | Hypothetical protein. | SURF1 family protein. | 0.700 |
KJL39137.1 | aioB | RS81_02231 | RS81_03149 | Hypothetical protein. | Arsenite oxidase subunit AioB precursor. | 0.632 |
KJL39137.1 | secY | RS81_02231 | RS81_01530 | Hypothetical protein. | Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.580 |
aioB | KJL38083.1 | RS81_03149 | RS81_03081 | Arsenite oxidase subunit AioB precursor. | SURF1 family protein. | 0.573 |
aioB | KJL39137.1 | RS81_03149 | RS81_02231 | Arsenite oxidase subunit AioB precursor. | Hypothetical protein. | 0.632 |
aioB | ctaA | RS81_03149 | RS81_03098 | Arsenite oxidase subunit AioB precursor. | Heme A synthase. | 0.710 |
page 1 of 3