STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erfK_3L,D-transpeptidase catalytic domain. (210 aa)    
Predicted Functional Partners:
SFC06248.1
L,D-transpeptidase catalytic domain.
 
  
 0.747
SFD26913.1
L,D-transpeptidase catalytic domain.
 
  
 0.704
SFC99264.1
Invasion protein IalB, involved in pathogenesis.
  
     0.670
mepA_2
Murein endopeptidase. Metallo peptidase. MEROPS family M74.
  
     0.601
SFC93904.1
Hypothetical protein.
  
     0.524
SFC56376.1
Hypothetical protein.
  
     0.503
SFC55323.1
Hypothetical protein.
  
     0.483
SFC06292.1
Cysteine-rich secretory protein family protein.
 
     0.480
mmsA
Methylmalonate-semialdehyde dehydrogenase [acylating].
       0.467
tamB
Autotransporter secretion inner membrane protein TamB.
  
     0.407
Your Current Organism:
Epibacterium multivorans
NCBI taxonomy Id: 928856
Other names: CECT 7557, DSM 26470, E. multivorans, KCTC 23350, Tropicibacter multivorans, Tropicibacter multivorans Lucena et al. 2012, Tropicibacter sp. CECT 7557, strain MD5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.