STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vdhUnspecific monooxygenase; Belongs to the cytochrome P450 family. (394 aa)    
Predicted Functional Partners:
ophA1
Vanillate O-demethylase ferredoxin subunit.
 
 0.985
SFD04353.1
Ferredoxin, 2Fe-2S.
  
 0.961
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.943
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.931
SFD18778.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
 
 0.891
hcr_1
Ferredoxin-NADP reductase.
 
 0.860
cysC
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
   
 0.849
cobB_2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
  0.818
fadH
2,4-dienoyl-CoA reductase.
     
 0.750
nicC
Salicylate hydroxylase.
  
 0.733
Your Current Organism:
Epibacterium multivorans
NCBI taxonomy Id: 928856
Other names: CECT 7557, DSM 26470, E. multivorans, KCTC 23350, Tropicibacter multivorans, Tropicibacter multivorans Lucena et al. 2012, Tropicibacter sp. CECT 7557, strain MD5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.