STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafR_1Transcriptional regulator, LacI family. (341 aa)    
Predicted Functional Partners:
gltB_2
Glutamate synthase (NADPH) large subunit.
    
 
 0.916
yihS
Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family.
 
     0.781
ccpA_1
Transcriptional regulator, LacI family.
  
     0.770
ccpA_2
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.769
degA
Transcriptional regulator, LacI family.
  
     0.766
gntR_2
Transcriptional regulator, LacI family.
  
     0.760
rbsR
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.589
ptsO
Phosphocarrier protein.
   
 
 0.570
yciC_1
GTPase, G3E family.
   
   0.559
speB_1
Agmatinase; Belongs to the arginase family.
       0.519
Your Current Organism:
Epibacterium multivorans
NCBI taxonomy Id: 928856
Other names: CECT 7557, DSM 26470, E. multivorans, KCTC 23350, Tropicibacter multivorans, Tropicibacter multivorans Lucena et al. 2012, Tropicibacter sp. CECT 7557, strain MD5
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.