STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaJ_2Acyl dehydratase. (120 aa)    
Predicted Functional Partners:
phaJ_1
MaoC like domain-containing protein.
     0.979
yvdT_1
Transcriptional regulator, TetR family.
 
     0.941
ydjP
Pimeloyl-ACP methyl ester carboxylesterase.
 
  
  0.938
dch
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
 
  0.928
lcfB_1
fatty-acyl-CoA synthase.
 
  
  0.921
SFD18778.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.860
livF_1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
     0.859
livH_1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.858
lptB_1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-).
 
     0.853
SFD69468.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.847
Your Current Organism:
Epibacterium multivorans
NCBI taxonomy Id: 928856
Other names: CECT 7557, DSM 26470, E. multivorans, KCTC 23350, Tropicibacter multivorans, Tropicibacter multivorans Lucena et al. 2012, Tropicibacter sp. CECT 7557, strain MD5
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