STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARO13409.1Polysaccharide deacetylase. (322 aa)    
Predicted Functional Partners:
ARO13411.1
Isochorismatase hydrolase.
 
     0.938
ARO13412.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.925
bisC
Biotin sulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.839
pdaA
peptidoglycan-N-acetylmuramic acid deacetylase.
 
    
0.829
ARO13408.1
Hypothetical protein.
 
     0.807
ddpA
ABC transporter, substrate binding protein (oligopeptide).
 
     0.663
lysR
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
 
   0.625
ddpB
Binding-protein-dependent transport systems inner membrane component.
 
     0.505
ddpC
Oligopeptide/dipeptide ABC transporter permease component protein.
 
     0.480
ARO13415.1
FAD dependent oxidoreductase.
 
     0.472
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.