STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARO13695.1Aminotransferase, class V. (491 aa)    
Predicted Functional Partners:
ARO14358.1
Hypothetical protein.
  
 
 0.951
ttcA
tRNA 2-thiocytidine biosynthesis protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
     0.914
sufC
FeS assembly ATPase SufC.
 
  
 0.853
sufB
Fe-S cluster assembly protein SufB.
 
 
 0.826
sufD
SufBD protein.
 
 
 0.824
ARO14333.1
Fe-S metabolism associated family protein.
  
 
 0.764
ARO13797.1
Hypothetical protein.
    
   0.760
ARO13696.1
Hypothetical protein.
       0.542
ARO13697.1
Transglutaminase.
       0.436
iscA
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
  
 
 0.425
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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