STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARO13729.1Diguanylate phosphodiesterase. (273 aa)    
Predicted Functional Partners:
pleD
GGDEF domain protein.
 
 0.922
ARO13543.1
Diguanylate cyclase.
 
 
0.791
ARO14718.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
0.696
ARO13730.1
Membrane protein, putative.
  
    0.636
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.612
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
 
 0.568
moaE
Molybdopterin synthase catalytic subunit.
       0.567
moaD
Molybdopterin synthase sulfur carrier subunit.
       0.544
cckA
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 
  
 0.537
flgG
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
  
    0.499
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.