STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpC-4Peptide/nickel transport system permease protein. (277 aa)    
Predicted Functional Partners:
ddpB-4
Dipeptide ABC transporter.
    0.957
ddpA-5
ABC transporter substrate-binding protein.
   0.929
ddpB-9
Dipeptide transport system permease protein DppB.
    0.819
ddpB-12
Peptide/nickel transport system permease protein.
    0.819
ddpF-2
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
      0.813
gsiC
Glutathione transport system permease protein.
    0.810
ddpB-3
ABC transporter transmembrane protein (dipeptide).
    0.802
ddpB-13
Peptide/nickel transport system permease protein.
    0.795
ARO13886.1
Esterase.
       0.774
ddpB
Binding-protein-dependent transport systems inner membrane component.
    0.769
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.