Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARO13978.1 | csaA | BVG79_00626 | BVG79_00628 | Hypothetical protein. | Chaperonin CsaA. | 0.743 |
ARO13978.1 | gyaR | BVG79_00626 | BVG79_00629 | Hypothetical protein. | Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.643 |
ARO13978.1 | proC | BVG79_00626 | BVG79_00627 | Hypothetical protein. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.743 |
csaA | ARO13978.1 | BVG79_00628 | BVG79_00626 | Chaperonin CsaA. | Hypothetical protein. | 0.743 |
csaA | gltB | BVG79_00628 | BVG79_02092 | Chaperonin CsaA. | Glutamate synthase (NADPH/NADH) large chain. | 0.661 |
csaA | guaA | BVG79_00628 | BVG79_01419 | Chaperonin CsaA. | Guanine monophosphate synthase; Catalyzes the synthesis of GMP from XMP. | 0.546 |
csaA | gyaR | BVG79_00628 | BVG79_00629 | Chaperonin CsaA. | Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.831 |
csaA | pheS | BVG79_00628 | BVG79_00229 | Chaperonin CsaA. | phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.945 |
csaA | polA | BVG79_00628 | BVG79_01626 | Chaperonin CsaA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.614 |
csaA | proC | BVG79_00628 | BVG79_00627 | Chaperonin CsaA. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.863 |
csaA | rpoC | BVG79_00628 | BVG79_02220 | Chaperonin CsaA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.499 |
csaA | topA | BVG79_00628 | BVG79_01492 | Chaperonin CsaA. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.448 |
csaA | valS | BVG79_00628 | BVG79_01809 | Chaperonin CsaA. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.457 |
gltB | csaA | BVG79_02092 | BVG79_00628 | Glutamate synthase (NADPH/NADH) large chain. | Chaperonin CsaA. | 0.661 |
gltB | guaA | BVG79_02092 | BVG79_01419 | Glutamate synthase (NADPH/NADH) large chain. | Guanine monophosphate synthase; Catalyzes the synthesis of GMP from XMP. | 0.842 |
gltB | polA | BVG79_02092 | BVG79_01626 | Glutamate synthase (NADPH/NADH) large chain. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.674 |
gltB | proC | BVG79_02092 | BVG79_00627 | Glutamate synthase (NADPH/NADH) large chain. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.747 |
gltB | rpoC | BVG79_02092 | BVG79_02220 | Glutamate synthase (NADPH/NADH) large chain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.761 |
gltB | topA | BVG79_02092 | BVG79_01492 | Glutamate synthase (NADPH/NADH) large chain. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.775 |
guaA | csaA | BVG79_01419 | BVG79_00628 | Guanine monophosphate synthase; Catalyzes the synthesis of GMP from XMP. | Chaperonin CsaA. | 0.546 |
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