STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yphD-2Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (360 aa)    
Predicted Functional Partners:
yphE-3
Sugar ABC transporter.
 
 
 0.993
bmpA
Basic membrane lipoprotein.
 
 
 0.991
yphD
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.975
yphE-2
Simple sugar transport system ATP-binding protein.
 
 
 0.973
yphE
Sugar ABC transporter ATP-binding protein.
 
 
 0.972
tmpC
Basic membrane protein A-related proteins.
 
 
 0.961
yphF
Bmp family protein.
 
 
 0.941
ARO13636.1
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.927
ARO13999.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.926
ARO14000.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.924
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.