STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiAN-acetylmuramoyl-L-alanine amidase. (400 aa)    
Predicted Functional Partners:
ARO14322.1
Aminotransferase, classes I and II superfamily protein.
  
    0.867
ARO13995.1
Rhomboid family protein.
 
   0.781
lolA
Twin-arginine translocation pathway signal; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.735
ARO14321.1
Outer membrane protein.
  
  
 0.688
ftsE
Cell division ATP-binding protein FtsE.
 
   
 0.636
ARO15576.1
Hypothetical protein.
 
  
 0.603
ftsX
Cell division protein FtsX.
 
   
 0.591
folE
Putative GTP cyclohydrolase.
  
  
 0.493
pncC
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
 
     0.426
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
    0.420
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.