STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpC-9Dipeptide transport system permease protein DppC. (286 aa)    
Predicted Functional Partners:
ddpB-9
Dipeptide transport system permease protein DppB.
 
  0.995
ddpD-8
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  0.987
ddpA-11
Extracellular solute-binding protein.
  0.987
ddpF-7
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
  0.984
ddpB-12
Peptide/nickel transport system permease protein.
    0.818
ddpB-4
Dipeptide ABC transporter.
    0.817
ARO14634.1
Proline dipeptidase.
 
    0.808
gsiC
Glutathione transport system permease protein.
    0.800
ddpB-13
Peptide/nickel transport system permease protein.
    0.798
ddpB
Binding-protein-dependent transport systems inner membrane component.
    0.795
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.