STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcVSolute-binding component of ABC transporter. (275 aa)    
Predicted Functional Partners:
potC
Spermidine/putrescine ABC transporter.
 
0.997
afuC-2
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.969
potD
Extracellular solute-binding protein family 1.
 
  
 0.945
potC-2
Spermidine/putrescine transport system permease protein.
  
 0.924
potA
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.850
potA-2
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.814
afuC
iron(III) transport system ATP-binding protein.
 
 0.800
ARO14664.1
Cytosolic nonspecific dipeptidase.
       0.773
ydcV-2
Putative transmembrane permease component of ABC transporter.
 
  
 0.695
ydcS
Polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein.
 
  
 0.668
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.