STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino-acid dehydrogenase; Oxidative deamination of D-amino acids. (417 aa)    
Predicted Functional Partners:
hppD
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.911
ARO15185.1
D-amino acid dehydrogenase small subunit.
  
  
 
0.907
dat
D-alanine transaminase.
     
 0.900
tyrB
Aromatic amino acid aminotransferase.
     
 0.900
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.900
aspB
Aspartate aminotransferase.
     
 0.900
hisC-2
Histidinol-phosphate aminotransferase.
   
 
  0.900
ARO15186.1
Endoribonuclease L-PSP.
 
    0.479
ARO14677.1
Endoribonuclease L-PSP.
 
    0.461
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.