STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpE-3Sugar ABC transporter permease. (272 aa)    
Predicted Functional Partners:
smoF
ABC transporter permease.
 
   0.967
ugpB-2
Sn-glycerol 3-phosphate transport system substrate-binding protein.
 
  0.965
ugpA-2
Sn-glycerol 3-phosphate transport system permease protein.
 
  0.961
ugpA
Transmembrane component of ABC transporter protein.
 
  0.959
ARO14893.1
Glycerol-3-phosphate ABC transporter substrate-binding protein.
 
   0.948
ugpC-2
ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
  0.935
ugpA-3
Sn-glycerol-3-phosphate ABC transporter permease.
 
  0.934
ugpC
Sn-glycerol 3-phosphate transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.921
ugpB
Sn-glycerol 3-phosphate ABC transporter substrate binding protein.
  
  0.874
ugpB-3
Sn-glycerol 3-phosphate transport system substrate-binding protein.
  
  0.874
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.