STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjN-3Sugar ABC transporter substrate-binding protein. (414 aa)    
Predicted Functional Partners:
ycjO-4
Sugar ABC transporter transmembrane protein.
 
   0.960
ycjP-3
Binding-protein-dependent transporters inner membrane component.
 
   0.959
argH-2
Argininosuccinate lyase 2.
 
     0.932
ARO15041.1
Ribokinase-like domain-containing protein.
 
    0.893
ARO15034.1
LmbE family protein.
 
     0.859
ycjV-2
ATP-binding transport protein smoK; Belongs to the ABC transporter superfamily.
  
   0.841
ARO15035.1
Xylose repressor.
 
    0.820
ARO14588.1
LmbE family protein.
  
     0.767
msmF
Sugar ABC transporter permease.
 
   0.630
sam
S-adenosylmethionine uptake transporter.
 
     0.574
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.