STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptClptC. (208 aa)    
Predicted Functional Partners:
lptA
OstA-like protein.
 
   
 0.890
kdsD
Arabinose 5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.876
rnd-2
Ribonuclease D.
       0.863
lptB
Lipopolysaccharide export system ATP-binding protein.
       0.863
ARO14319.1
Hypothetical protein.
  
     0.750
ARO13739.1
Hypothetical protein.
  
     0.708
ARO15117.1
Hypothetical protein.
  
     0.705
ARO13877.1
Hypothetical protein.
 
     0.691
ARO14119.1
Hypothetical protein.
  
     0.669
hemY-2
HemY domain protein.
 
     0.669
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.