STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptELPS-assembly lipoprotein. (149 aa)    
Predicted Functional Partners:
holA
DNA polymerase III subunit delta.
 
    0.937
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.776
ARO15117.1
Hypothetical protein.
  
     0.751
ARO13877.1
Hypothetical protein.
  
     0.733
ARO14119.1
Hypothetical protein.
  
     0.726
ARO15160.1
Hypothetical protein.
  
     0.725
ARO13739.1
Hypothetical protein.
  
     0.716
ARO14319.1
Hypothetical protein.
  
     0.705
mreD
Rod shape-determining protein MreD.
  
     0.700
ARO15583.1
Hypothetical protein.
  
     0.697
Your Current Organism:
Ketogulonicigenium robustum
NCBI taxonomy Id: 92947
Other names: K. robustum, KCTC 0858BP, Ketogulonicigenium robustum Urbance et al. 2001, Ketogulonigenium robustum, NRRL B-21627, strain X6L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.