STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prmARibosomal protein L11 methyltransferase. (312 aa)    
Predicted Functional Partners:
CbC4_1830
Conserved hypothetical protein TIGR00046.
 
  
 0.954
CbC4_1829
MiaB-like tRNA modifying enzyme.
  
  
 0.934
dnaJ
Chaperone protein DnaJ.
  
  
 0.887
rplK
Ribosomal protein L11.
  
 
 
 0.870
CbC4_1499
Ribosomal RNA small subunit methyltransferase B.
 
  
 0.741
CbC4_1828
Histidine triad (HIT) protein.
     
 0.706
CbC4_0538
Molecular chaperone, DnaJ family; Contain C-term Zn finger domain.
  
  
 0.686
CbC4_1827
Ribosomal protein S21.
     
 0.664
hrcA
Heat-inducible transcription repressor HrcA.
  
  
 0.664
dnaK
Chaperone protein DnaK.
  
  
 0.652
Your Current Organism:
Clostridium botulinum BKT015925
NCBI taxonomy Id: 929506
Other names: C. botulinum BKT015925, Clostridium botulinum str. BKT015925, Clostridium botulinum strain BKT015925
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.