STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFD07276.1Fe-S-cluster-containing hydrogenase subunit. (308 aa)    
Predicted Functional Partners:
AFD07277.1
PFAM: Polysulphide reductase, NrfD.
 
 
 0.994
AFD08375.1
Fe-S-cluster-containing hydrogenase subunit.
 
 
0.960
AFD08374.1
PFAM: Polysulphide reductase, NrfD.
 
 
 0.941
AFD07279.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c.
 
 
 0.939
AFD08371.1
Hypothetical protein.
 
 
 0.926
AFD08373.1
PFAM: Protein of unknown function (DUF3341).
 
 
 0.890
AFD07273.1
Hypothetical protein.
 
 
 0.868
AFD06852.1
PFAM: Cytochrome c.
  
 
 0.866
tuf
Translation elongation factor TU; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.843
AFD07278.1
Hypothetical protein.
       0.788
Your Current Organism:
Solitalea canadensis
NCBI taxonomy Id: 929556
Other names: S. canadensis DSM 3403, Solitalea canadensis DSM 3403, Solitalea canadensis IFO 15130, Solitalea canadensis NBRC 15130, Solitalea canadensis str. DSM 3403, Solitalea canadensis strain DSM 3403
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.