STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01582.1PFAM: Peptidase family M23; LysM domain; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR002482:IPR016047:IPR018392; KEGG: lby:Lbys_0049 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase M23. (374 aa)    
Predicted Functional Partners:
AFK02781.1
PFAM: Peptidase family M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: sli:Slin_4398 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23.
 
   
 0.756
AFK01581.1
LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase; TIGRFAM: bacillithiol biosynthesis deacetylase BshB1; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: sli:Slin_0661 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: GlcNAc-PI de-N-acetylase family protein.
       0.575
AFK01583.1
Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase; COGs: COG0492 Thioredoxin reductase; InterPro IPR005982:IPR013027; KEGG: lby:Lbys_1281 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase.
  
    0.559
AFK03827.1
Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: lby:Lbys_2107 peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Peptidoglycan glycosyltransferase.
  
   
 0.544
AFK02638.1
Hypothetical protein; PFAM: Domain of Unknown Function (DUF349); KEGG: lby:Lbys_1946 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.511
AFK04639.1
D-alanine--D-alanine ligase domain protein; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase; COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011127; KEGG: lby:Lbys_3538 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, N-terminal; SPTR: D-alanine--D-alanine ligase.
 
   
 0.503
AFK01584.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR001440:IPR011659:IPR006665; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Tetratricopeptide TPR-1; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein.
 
  
 0.500
AFK04356.1
Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: lby:Lbys_3465 glycosyl transferase family 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Glycosyl transferase family 51.
  
   
 0.495
AFK02757.1
KEGG: lby:Lbys_2764 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.491
AFK02413.1
PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; InterPro IPR011812:IPR001264; KEGG: lby:Lbys_1742 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51; SPTR: Monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase.
  
   
 0.461
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.