STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01636.1Methyltransferase type 11; PFAM: Methyltransferase domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: lby:Lbys_0850 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11. (266 aa)    
Predicted Functional Partners:
AFK05230.1
KEGG: dfe:Dfer_0460 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.674
AFK01635.1
Oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR004559:IPR007197:IPR010723; KEGG: dfe:Dfer_5773 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase.
       0.579
AFK05211.1
KEGG: lby:Lbys_0889 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.578
AFK03451.1
KEGG: lby:Lbys_1112 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.573
AFK05090.1
PFAM: Protein of unknown function (DUF3098); KEGG: lby:Lbys_0062 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.561
AFK01637.1
KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
       0.507
AFK03239.1
Methyltransferase type 11; PFAM: Methyltransferase domain; InterPro IPR013216; KEGG: bba:Bd1701 putative methyltransferase; PFAM: Methyltransferase type 11; SPTR: Putative methyltransferase.
 
 0.455
AFK03220.1
KEGG: lby:Lbys_2391 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.451
AFK01638.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: dfe:Dfer_1295 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70.
       0.447
AFK01634.1
KEGG: scl:sce5426 hypothetical protein; SPTR: DoxX family protein.
       0.442
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.