STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01643.1PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type; COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR002942:IPR005709:IPR001912; KEGG: sli:Slin_5761 ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type. (201 aa)    
Predicted Functional Partners:
AFK01642.1
DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type; COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011263:IPR011773:IPR011261:IPR011262:IPR 011260; KEGG: lby:Lbys_1803 DNA-directed RNA polymerase subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymeras [...]
 
 0.999
AFK01644.1
PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; COGs: COG0100 Ribosomal protein S11; InterPro IPR019981:IPR001971; KEGG: dfe:Dfer_4368 30S ribosomal protein S11; PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type.
 
 0.999
AFK01645.1
PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; COGs: COG0099 Ribosomal protein S13; InterPro IPR019980:IPR001892; KEGG: lby:Lbys_1806 ssu ribosomal protein s13p; PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type.
 
 0.999
AFK01652.1
PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; COGs: COG0098 Ribosomal protein S5; InterPro IPR005712:IPR013810:IPR005324; KEGG: lby:Lbys_1813 ssu ribosomal protein s5p; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type.
 
 0.999
AFK01655.1
PFAM: Ribosomal protein S8; COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: sli:Slin_5773 ribosomal protein S8; PFAM: Ribosomal protein S8; SPTR: 30S ribosomal protein S8.
 
 0.999
AFK01662.1
PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle; COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR000114:IPR016180; KEGG: lby:Lbys_1823 lsu ribosomal protein l16p; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16.
 
 0.999
AFK01663.1
PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type; COGs: COG0092 Ribosomal protein S3; InterProIPR004087:IPR005704:IPR008282:IPR004044:IPR 001351; KEGG: sli:Slin_5781 ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial.
 
 0.999
AFK01665.1
PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle; COGs: COG0185 Ribosomal protein S19; InterPro IPR005732:IPR002222; KEGG: mtt:Ftrac_3036 SSU ribosomal protein s19p; PFAM: Ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type.
 
 0.999
AFK03170.1
PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; COGs: COG0049 Ribosomal protein S7; InterPro IPR005717:IPR000235; KEGG: lby:Lbys_1935 ssu ribosomal protein s7p; PFAM: Ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type.
 
 0.999
AFK01657.1
PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5; COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: lby:Lbys_1818 lsu ribosomal protein l5p; PFAM: Ribosomal protein L5; SPTR: 50S ribosomal protein L5.
 
 0.998
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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