STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01678.1PFAM: UbiA prenyltransferase family; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: dfe:Dfer_2883 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase. (293 aa)    
Predicted Functional Partners:
AFK01679.1
PFAM: 3-dehydroquinate synthase; COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: lby:Lbys_0400 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; SPTR: 3-dehydroquinate synthase.
 
   
 0.927
AFK01677.1
TatD-related deoxyribonuclease; PFAM: TatD related DNase; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: lby:Lbys_0398 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease.
 
   
 0.904
AFK01676.1
KEGG: dfe:Dfer_2881 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.880
AFK01680.1
KEGG: lby:Lbys_0401 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.879
AFK01681.1
PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_2886 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase.
 
   
 0.855
AFK04212.1
PFAM: Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: lby:Lbys_2917 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase.
  
 
 0.834
AFK04668.1
PKD domain containing protein; PFAM: Cytochrome c; Trehalose utilisation; Carbohydrate binding module (family 6); PKD domain; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084:IPR006584; KEGG: sli:Slin_3440 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; SPTR: PKD domain containing protein.
 
    0.713
AFK02376.1
PFAM: Glucose / Sorbosone dehydrogenase; PKD domain; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088; KEGG: sli:Slin_0335 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; SMART: PKD; SPTR: Transcriptional regulator, Crp/Fnr family.
 
    0.704
AFK03354.1
PKD domain containing protein; PFAM: Cytochrome c; Trehalose utilisation; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: PKD; Cytochrome c, class I; SPTR: Cytochrome c class I.
 
    0.699
AFK04752.1
Carbohydrate binding family 6; PFAM: Cytochrome c; Glucose / Sorbosone dehydrogenase; Trehalose utilisation; Carbohydrate binding module (family 6); COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088:IPR005084; KEGG: sli:Slin_4030 PKD domain containing protein; PFAM: Carbohydrate binding domain, family 6; Cytochrome c, class I; PKD; SPTR: PKD domain containing protein.
 
    0.663
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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