STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01839.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
AFK01838.1
PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910; KEGG: psn:Pedsa_2674 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor.
       0.746
AFK01837.1
PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR006311; KEGG: shg:Sph21_2951 xylose isomerase domain-containing protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Putative uncharacterized protein.
       0.502
AFK01840.1
PFAM: Bacterial protein of unknown function (DUF885); COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: sli:Slin_0380 hypothetical protein; PFAM: Protein of unknown function DUF885, bacterial; SPTR: Putative uncharacterized protein.
       0.485
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.