STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01841.1KEGG: dfe:Dfer_0099 hypothetical protein; SPTR: Putative uncharacterized protein. (299 aa)    
Predicted Functional Partners:
AFK01843.1
KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.906
AFK01842.1
PFAM: Cytochrome c; Di-haem cytochrome c peroxidase; COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; SPTR: Cytochrome-c peroxidase.
 
     0.836
AFK01844.1
KEGG: dfe:Dfer_0096 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.556
AFK02948.1
PFAM: Phytanoyl-CoA dioxygenase (PhyH); InterPro IPR008775; KEGG: dfe:Dfer_3838 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: Phytanoyl-CoA dioxygenase.
 
     0.554
AFK03592.1
PFAM: Endonuclease/Exonuclease/phosphatase family; InterPro IPR005135; KEGG: dfe:Dfer_0035 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase.
  
     0.554
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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