STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01896.1PFAM: LD-carboxypeptidase; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: dfe:Dfer_2712 peptidase U61 LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61 LD-carboxypeptidase A. (304 aa)    
Predicted Functional Partners:
AFK01897.1
Ion transport 2 domain protein; PFAM: Inward rectifier potassium channel; InterPro IPR013099; KEGG: sli:Slin_0210 K channel inward rectifier conserved region 2 domain protein; PFAM: Ion transport 2; SPTR: K channel inward rectifier conserved region 2 domain protein.
 
     0.668
AFK01894.1
PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR001753:IPR006176:IPR006108; KEGG: sli:Slin_6109 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; SPTR: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
       0.486
AFK01895.1
KEGG: bth:BT_1588 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.486
AFK01898.1
PFAM: Protein of unknown function (DUF721); InterPro IPR007922; KEGG: sli:Slin_0216 hypothetical protein; PFAM: Protein of unknown function DUF721; SPTR: Putative uncharacterized protein.
       0.482
AFK03048.1
PFAM: Protein of unknown function (DUF1343); COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: lic:LIC13022 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Putative uncharacterized protein.
  
     0.416
AFK04988.1
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: dfe:Dfer_5621 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR:D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
 
   
 0.409
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.