STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK01900.1PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit; COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: lby:Lbys_0755 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC. (92 aa)    
Predicted Functional Partners:
AFK03106.1
PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791:IPR003335:IPR005665; KEGG: lby:Lbys_2814 proteiN-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein.
  
 
 0.998
AFK01649.1
PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: lby:Lbys_1810 protein translocase subunit SecY/sec61 alpha; PFAM: SecY protein; SPTR: Protein translocase subunit secY/sec61 alpha; TIGRFAM: SecY protein.
   
 
 0.957
AFK04705.1
PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit; InterPro IPR004692; KEGG: lby:Lbys_1145 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit.
  
 
 0.956
AFK02464.1
PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial; InterPro IPR005807:IPR001901; KEGG: lby:Lbys_2293 preprotein translocase, SecE subunit; PFAM: Protein secE/sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex.
   
 
 0.953
AFK01869.1
PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain; COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR001708:IPR019998:IPR020001; KEGG: lby:Lbys_0559 membrane protein insertase, YidC/oxa1 family; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein oxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal.
 
 
 0.949
AFK02969.1
PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit; COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: Protein translocase subunit secA; InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 000185; KEGG: lby:Lbys_3422 protein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; DNA/RNA helicase, C-terminal; SecA Wing/Scaffold; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein.
     
 0.933
AFK03470.1
Signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY; COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390:IPR013822:IPR000897:IPR003593; KEGG: lby:Lbys_2382 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division [...]
    
 0.924
AFK02212.1
Signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein; COGs: COG0541 Signal recognition particle GTPase; InterProIPR003593:IPR013822:IPR000897:IPR004125:IPR 004780; KEGG: lby:Lbys_2016 signal recognition particle subunit ffh/SRP54 (SRP54); PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: [...]
    
 0.923
AFK01899.1
KEGG: sli:Slin_6326 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.744
AFK05339.1
PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: lby:Lbys_0892 ssu ribosomal protein s16p; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16.
  
  
 0.724
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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