STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02003.1PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase; COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: lby:Lbys_1175 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase. (116 aa)    
Predicted Functional Partners:
AFK02103.1
Pantothenate synthetase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain; COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721:IPR004821; KEGG: sli:Slin_4462 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related.
 
 0.999
AFK02780.1
3-methyl-2-oxobutanoatehydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: lby:Lbys_2985 ketopantoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase.
 
  
 0.948
AFK04777.1
PFAM: Aldehyde dehydrogenase family; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: cpi:Cpin_3681 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase.
     
 0.904
AFK01720.1
KEGG: dfe:Dfer_3342 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.863
AFK05098.1
L-asparaginase, type I; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006033:IPR006034; KEGG: dfe:Dfer_5475 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; SPTR: L-asparaginase, type I; TIGRFAM: L-asparaginase, type I.
     
 0.842
AFK03039.1
L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase; COGs: COG0029 Aspartate oxidase; InterPro IPR005288:IPR003953:IPR004112; KEGG: lby:Lbys_0473 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase.
    
 0.837
AFK02562.1
Putative transcriptional acitvator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III; COGs: COG1521 Putative transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_4140 putative transcriptional acitvator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase 1; TIGRFAM: Bordetella pertussis Bvg accessory factor.
 
  
 0.823
AFK03141.1
PFAM: Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: lby:Lbys_2637 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; SPTR: Aminotransferase class I and II.
    
 0.822
AFK04074.1
PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase; COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: sli:Slin_1608 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase.
    
  0.812
AFK02410.1
PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR001962; KEGG: gur:Gura_1346 asparagine synthase; PFAM: Asparagine synthase; SPTR: Asparagine synthase.
     
  0.800
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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