STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02097.1NIPSNAP family containing protein; PFAM: NIPSNAP; InterPro IPR012577; KEGG: sli:Slin_0395 NIPSNAP family containing protein; PFAM: NIPSNAP; SPTR: NIPSNAP family containing protein. (248 aa)    
Predicted Functional Partners:
AFK02215.1
PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428:IPR013427; KEGG: sli:Slin_5811 dehydrogenase; SPTR: Heme-binding domain-containing protein; TIGRFAM: Putative membrane-bound dehydrogenase; Putative haem-binding region; manually curated.
  
     0.700
AFK04035.1
Protein of unknown function DUF2261, transmembrane; COGs: COG4299 conserved hypothetical protein; InterPro IPR019259; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF2261, transmembrane; SPTR: Putative uncharacterized protein.
  
     0.585
AFK02095.1
PFAM: NAD dependent epimerase/dehydratase family; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sli:Slin_4249 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase.
 
     0.548
AFK03536.1
PFAM: Cytochrome c; InterPro IPR003088; KEGG: cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I.
  
     0.543
AFK04430.1
PFAM: Cytochrome c; KEGG: sli:Slin_4998 cytochrome c class I; SPTR: Cytochrome c class I.
 
     0.532
AFK02096.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2200); COGs: COG4898 conserved hypothetical protein; InterPro IPR014580; KEGG: cpi:Cpin_6024 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; SPTR: Putative uncharacterized protein.
       0.475
AFK03605.1
PFAM: Phosphoesterase family; 3-carboxy-cis,cis-muconate lactonizing enzyme; TIGRFAM: 40-residue YVTN family beta-propeller repeat; COGs: COG3391 conserved hypothetical protein; InterPro IPR007312; KEGG: sli:Slin_6217 40-residue YVTN family beta-propeller repeat protein; PFAM: Phosphoesterase; SPTR: 40-residue YVTN family beta-propeller repeat protein.
  
     0.470
AFK02689.1
PFAM: Domain of Unknown Function (DUF1080); InterPro IPR010496; KEGG: sli:Slin_1177 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein.
  
     0.464
AFK02107.1
Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: phosphonate degradation operons associated HDIG domain protein; uncharacterized domain HDIG; COGs: COG4341 HD phosphohydrolase; InterPro IPR006675; KEGG: sli:Slin_3397 metal dependent phosphohydrolase; SPTR: Phosphonate degradation operons associated HDIG domain protein; TIGRFAM: HDIG.
  
     0.457
AFK02423.1
Hypothetical protein; PFAM: Trehalose utilisation; KEGG: hypothetical protein; SPTR: Signal peptide and transmembrane prediction.
  
     0.447
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.