STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02109.1PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910; KEGG: sli:Slin_3400 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug. (1073 aa)    
Predicted Functional Partners:
AFK02108.1
KEGG: sli:Slin_3399 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
   0.915
AFK01735.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: sli:Slin_4207 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
  
 
  0.763
AFK03183.1
KEGG: cpi:Cpin_6728 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   0.750
AFK05258.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: dfe:Dfer_3283 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
  
 
  0.703
AFK02372.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: dfe:Dfer_4947 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
  
 
  0.663
AFK02111.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: phosphonatase-like hydrolase; COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: sli:Slin_3402 haloacid dehalogenase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase.
 
     0.651
AFK02107.1
Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: phosphonate degradation operons associated HDIG domain protein; uncharacterized domain HDIG; COGs: COG4341 HD phosphohydrolase; InterPro IPR006675; KEGG: sli:Slin_3397 metal dependent phosphohydrolase; SPTR: Phosphonate degradation operons associated HDIG domain protein; TIGRFAM: HDIG.
 
     0.648
AFK04904.1
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_4056 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein.
  
  
  0.626
AFK02203.1
PFAM: Protein of unknown function (DUF3179); KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.619
AFK02106.1
Hypothetical protein; PFAM: Metalloenzyme superfamily; KEGG: fjo:Fjoh_2225 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.616
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.