STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02133.1KEGG: lby:Lbys_0476 hypothetical protein; SPTR: Putative uncharacterized protein. (187 aa)    
Predicted Functional Partners:
AFK02268.1
Hypothetical protein; PFAM: CcmE; KEGG: lby:Lbys_0748 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.766
AFK02265.1
ABC-2 type transporter; PFAM: CcmB protein; COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR013525; KEGG: sli:Slin_1448 cytochrome c biogenesis protein CcmB; PFAM: ABC-2 type transporter; SPTR: Cytochrome c-type biogenesis protein CcmB.
  
     0.711
AFK02446.1
TIGRFAM: gliding motility associated protien GldN; InterPro IPR019847; KEGG: sli:Slin_3222 gliding motility associated protein GldN; SPTR: Gliding motility associated protein GldN; TIGRFAM: Gliding motility associated protein GldN.
  
     0.695
AFK04107.1
PFAM: ABC transporter; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_2685 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related.
  
     0.670
AFK02448.1
TIGRFAM: gliding motility-associated protein GldL; InterPro IPR019852; KEGG: lby:Lbys_1723 gliding motility-associated protein gldl; SPTR: Gliding motility-associated protein GldL; TIGRFAM: Gliding motility-associated protein, GldL.
  
     0.666
AFK04096.1
PFAM: Fibronectin type III domain; InterPro IPR003961; KEGG: sli:Slin_6385 hypothetical protein; PFAM: Fibronectin, type III; SPTR: Putative uncharacterized protein.
  
     0.660
AFK03342.1
PFAM: Surface antigen variable number repeat; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: Surface antigen variable number; SPTR: Surface antigen variable number repeat protein.
  
     0.626
AFK03925.1
PFAM: PspC domain; KEGG: dfe:Dfer_4007 phage shock protein C, PspC; SPTR: Phage shock protein C, PspC; manually curated.
  
     0.619
AFK02929.1
KEGG: sli:Slin_0659 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.618
AFK02918.1
KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.616
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.