STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02212.1Signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein; COGs: COG0541 Signal recognition particle GTPase; InterProIPR003593:IPR013822:IPR000897:IPR004125:IPR 004780; KEGG: lby:Lbys_2016 signal recognition particle subunit ffh/SRP54 (SRP54); PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: [...] (438 aa)    
Predicted Functional Partners:
AFK03470.1
Signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY; COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390:IPR013822:IPR000897:IPR003593; KEGG: lby:Lbys_2382 signal recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division [...]
 
0.994
AFK01649.1
PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit; COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: lby:Lbys_1810 protein translocase subunit SecY/sec61 alpha; PFAM: SecY protein; SPTR: Protein translocase subunit secY/sec61 alpha; TIGRFAM: SecY protein.
   
 0.977
AFK02464.1
PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial; InterPro IPR005807:IPR001901; KEGG: lby:Lbys_2293 preprotein translocase, SecE subunit; PFAM: Protein secE/sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex.
  
 0.974
AFK04705.1
PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit; InterPro IPR004692; KEGG: lby:Lbys_1145 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit.
    
 0.970
AFK03106.1
PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791:IPR003335:IPR005665; KEGG: lby:Lbys_2814 proteiN-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein.
  
 
 0.948
AFK01652.1
PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; COGs: COG0098 Ribosomal protein S5; InterPro IPR005712:IPR013810:IPR005324; KEGG: lby:Lbys_1813 ssu ribosomal protein s5p; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type.
 
 
 0.947
AFK01650.1
PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle; COGs: COG0200 Ribosomal protein L15; InterPro IPR005749:IPR001196; KEGG: lby:Lbys_1811 lsu ribosomal protein l15p; PFAM: Ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type.
 
 
 0.941
AFK01869.1
PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain; COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR001708:IPR019998:IPR020001; KEGG: lby:Lbys_0559 membrane protein insertase, YidC/oxa1 family; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein oxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal.
   
 0.935
AFK02531.1
PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; COGs: COG0052 Ribosomal protein S2; InterPro IPR005706:IPR001865; KEGG: lby:Lbys_2854 ssu ribosomal protein s2p; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid.
  
 0.934
AFK01643.1
PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type; COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR002942:IPR005709:IPR001912; KEGG: sli:Slin_5761 ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type.
  
 
 0.932
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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