STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02265.1ABC-2 type transporter; PFAM: CcmB protein; COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR013525; KEGG: sli:Slin_1448 cytochrome c biogenesis protein CcmB; PFAM: ABC-2 type transporter; SPTR: Cytochrome c-type biogenesis protein CcmB. (220 aa)    
Predicted Functional Partners:
AFK02266.1
PFAM: Cytochrome C assembly protein; InterPro IPR002541; KEGG: sli:Slin_1447 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein.
 
 0.999
AFK02268.1
Hypothetical protein; PFAM: CcmE; KEGG: lby:Lbys_0748 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 0.949
AFK03656.1
PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF; COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541; KEGG: lby:Lbys_3417 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein.
 
  
 0.843
AFK02267.1
KEGG: psn:Pedsa_1829 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.801
AFK04107.1
PFAM: ABC transporter; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_2685 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related.
 
  
  0.760
AFK02133.1
KEGG: lby:Lbys_0476 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.711
AFK02169.1
PFAM: Histone H1-like protein Hc1; KEGG: lby:Lbys_3456 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.686
AFK05096.1
KEGG: sli:Slin_0714 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.619
AFK04013.1
KEGG: sli:Slin_2995 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.615
AFK04253.1
KEGG: lby:Lbys_3231 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.593
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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