STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02282.1PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR002627:IPR018022; KEGG: pru:PRU_1663 tRNA isopentenyltransferase; PFAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase 1; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase. (322 aa)    
Predicted Functional Partners:
AFK02280.1
PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR002627:IPR018022; KEGG: lby:Lbys_3446 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase.
  
  
 
0.924
AFK02283.1
KEGG: dfe:Dfer_0551 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.799
AFK03918.1
PFAM: GrpE; COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: sli:Slin_1520 GrpE protein; PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE.
  
  
 0.604
AFK02281.1
ThiJ/PfpI domain-containing protein; PFAM: DJ-1/PfpI family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR002818; KEGG: pjd:Pjdr2_0637 ThiJ/PfpI domain protein; PFAM: ThiJ/PfpI; SPTR: ThiJ/PfpI domain protein.
       0.601
AFK03628.1
GTP-binding proten HflX; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain; COGs: COG2262 GTPase; InterPro IPR002917:IPR016496:IPR005225; KEGG: lby:Lbys_2544 gtp-binding protein HflX; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein.
  
  
 0.556
AFK01614.1
Phenylalanyl-tRNA synthetase beta chain; PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: dfe:Dfer_0010 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA syntheta [...]
 
  
 0.552
AFK02284.1
KEGG: lby:Lbys_1284 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.517
AFK03046.1
ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG; COGs: COG1200 RecG-like helicase; InterProIPR014001:IPR001650:IPR004609:IPR004365:IPR 011545; KEGG: dfe:Dfer_4892 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: DNA helicase, ATP-dependent, RecG.
  
   
 0.507
AFK05027.1
Metalloprotease ybeY; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family; COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: dfe:Dfer_3801 protein of unknown function UPF0054; PFAM: Uncharacterised protein family UPF0054; SPTR: Probable rRNA maturation factor; TIGRFAM: Uncharacterised protein family UPF0054.
 
  
 0.498
AFK04709.1
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family; COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR006463:IPR013848:IPR007197:IPR002792:IPR 006638:IPR005839; KEGG: lby:Lbys_1149 tRNA-i(6)a37 thiotransferase enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMA [...]
 
  
 0.479
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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