STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02299.1PFAM: Xylose isomerase-like TIM barrel; InterPro IPR012307; KEGG: dfe:Dfer_4958 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Xylose isomerase domain protein TIM barrel. (305 aa)    
Predicted Functional Partners:
AFK02300.1
PFAM: Glycosyl Hydrolase Family 88; InterPro IPR010905; KEGG: sli:Slin_2836 hypothetical protein; PFAM: Glycosyl hydrolase, family 88; SPTR: Putative uncharacterized protein.
 
    0.838
AFK02304.1
Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: sli:Slin_2839 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; SPTR: Oxidoreductase domain protein.
 
    0.766
AFK04178.1
Blue (type 1) copper domain protein; PFAM: Copper binding proteins, plastocyanin/azurin family; InterPro IPR000923; KEGG: sli:Slin_6137 blue (type 1) copper domain protein; PFAM: Blue (type 1) copper domain; SPTR: Blue (Type 1) copper domain protein.
  
     0.686
AFK04179.1
KEGG: dfe:Dfer_1099 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.656
AFK02522.1
Hypothetical protein; PFAM: Trehalose utilisation; KEGG: fbc:FB2170_05375 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.631
AFK02302.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR.
 
    0.617
AFK02301.1
PFAM: NADH:flavin oxidoreductase / NADH oxidase family; COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: sli:Slin_2837 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; SPTR: NADH:flavin oxidoreductase/NADH oxidase.
 
     0.585
AFK03564.1
KEGG: sli:Slin_3971 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.576
AFK01803.1
Putative O-antigen-like protein; PFAM: Prolyl oligopeptidase family; KEGG: bfs:BF4091 putative O-antigen-like protein; SPTR: Putative uncharacterized protein.
  
     0.567
AFK03535.1
PFAM: Domain of Unknown Function (DUF1080); PA14 domain; InterPro IPR010496; KEGG: dfe:Dfer_3235 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein.
  
     0.560
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.