STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02420.1Hypothetical protein; PFAM: Acetoacetate decarboxylase (ADC); KEGG: scl:sce0117 hypothetical protein; SPTR: Putative uncharacterized protein. (217 aa)    
Predicted Functional Partners:
AFK02419.1
PFAM: NADPH-dependent FMN reductase; COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: mtt:Ftrac_3110 nadph-dependent fmn reductase; PFAM: NADPH-dependent FMN reductase; SPTR: NADPH-dependent FMN reductase.
       0.601
AFK02722.1
PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165:IPR012792:IPR012791; KEGG: sli:Slin_1533 3-oxoacid CoA-transferase subunit beta; PFAM: Coenzyme A transferase; SPTR: 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; 3-oxoacid CoA-transferase, subunit A.
 
   
 0.525
AFK04336.1
PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165:IPR012792:IPR012791; KEGG: pif:PITG_21128 succinyl CoA transferase, putative; PFAM: Coenzyme A transferase; SPTR: Succinyl CoA transferase, putative; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; 3-oxoacid CoA-transferase, subunit A.
 
   
 0.525
AFK02418.1
TIGRFAM: integral membrane protein; KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
       0.427
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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