STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02598.1Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: sli:Slin_0708 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein. (144 aa)    
Predicted Functional Partners:
AFK02597.1
PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: lby:Lbys_2690 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family.
       0.769
AFK02599.1
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sli:Slin_6010 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein.
       0.511
AFK02596.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; COGs: COG4365 conserved hypothetical protein; HAMAP: UPF0747 protein; InterPro IPR011199; KEGG: dfe:Dfer_3548 hypothetical protein; PFAM: Uncharacterised conserved protein UCP012535; SPTR: UPF0747 protein Dfer_3548.
       0.482
AFK03425.1
Phosphate acyltransferase; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: Phospholipid biosynthesis protein, PlsX like; InterPro IPR012281:IPR003664; KEGG: lby:Lbys_1685 phosphate:acyl-(acyl carrier protein) acyltransferase; PFAM: Fatty acid synthesis plsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: Phospholipid biosynthesis protein, PlsX like.
  
  
 0.442
AFK02603.1
COGs: COG4430 conserved hypothetical protein; KEGG: sli:Slin_4952 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.403
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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