STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02658.1PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein; InterPro IPR012657; KEGG: gfo:GFO_3239 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436. (116 aa)    
Predicted Functional Partners:
AFK02659.1
PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup; COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR011280:IPR003953:IPR004112; KEGG: lby:Lbys_2048 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; SPTR: Succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: Succinate dehydr [...]
       0.571
AFK02657.1
PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR004489:IPR001041; KEGG: lby:Lbys_2047 succinate dehydrogenase and fumarate reductase IroN-sulfur protein; PFAM: Ferredoxin; SPTR: Succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein.
       0.512
AFK02660.1
TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; InterPro IPR011138; KEGG: lby:Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family; TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit.
       0.471
AFK03297.1
PFAM: S23 ribosomal protein; InterPro IPR008815; KEGG: mtt:Ftrac_1685 s23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: S23 ribosomal protein.
  
     0.466
AFK03353.1
KEGG: fps:FP1030 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.415
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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