STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02831.1PFAM: GH3 auxin-responsive promoter; InterPro IPR004993; KEGG: dfe:Dfer_3833 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter. (496 aa)    
Predicted Functional Partners:
AFK02665.1
Alpha/beta hydrolase fold containing protein; PFAM: Ndr family; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dfe:Dfer_3893 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein.
  
   
 0.762
AFK05214.1
PFAM: Acyl-CoA reductase (LuxC); InterPro IPR008670; KEGG: dfe:Dfer_0440 acyl-CoA reductase; PFAM: Acyl-CoA reductase; SPTR: Acyl-CoA reductase.
 
 
 0.680
AFK02620.1
PFAM: Protein of unknown function (DUF2480); InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein.
  
     0.669
AFK03074.1
KEGG: mtt:Ftrac_2383 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.634
AFK04996.1
KEGG: lby:Lbys_1607 DoxX family protein; SPTR: DoxX family protein.
  
     0.590
AFK03942.1
KEGG: sli:Slin_1464 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.552
AFK02483.1
Regulatory protein recX; PFAM: RecX family; COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein recX; InterPro IPR003783; KEGG: dfe:Dfer_3293 regulatory protein RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein RecX.
  
     0.550
AFK02978.1
KEGG: sli:Slin_4754 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.550
AFK04290.1
KEGG: lby:Lbys_1770 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.536
AFK01880.1
DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; InterPro IPR003716; KEGG: lby:Lbys_0699 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA-directed RNA polymerase, omega subunit.
 
     0.520
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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