STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02869.1PFAM: Protein of unknown function (DUF420); COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: lby:Lbys_2198 hypothetical protein; PFAM: Protein of unknown function DUF420; SPTR: Putative uncharacterized protein. (179 aa)    
Predicted Functional Partners:
AFK02870.1
PFAM: SCO1/SenC; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: sli:Slin_5677 electron transporter SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC.
  
 0.983
AFK02872.1
PFAM: Cytochrome c oxidase subunit III; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: lby:Lbys_2195 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III.
 
     0.825
AFK02868.1
KEGG: lby:Lbys_2199 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.788
AFK02871.1
KEGG: lby:Lbys_2196 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.732
AFK02873.1
PFAM: Cytochrome c oxidase subunit III; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: lby:Lbys_2194 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III.
 
     0.716
AFK02874.1
PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase; COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); HAMAP: Protohaem IX farnesyltransferase; InterPro IPR000537:IPR006369; KEGG: lby:Lbys_2193 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase.
 
    0.711
AFK04818.1
PFAM: SCO1/SenC; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: dfe:Dfer_5207 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC.
 
  
 0.695
AFK02876.1
PFAM: Cytochrome C and Quinol oxidase polypeptide I; COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: lby:Lbys_2191 cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I; SPTR: Cytochrome c oxidase subunit I.
 
   
 0.678
AFK04243.1
PFAM: SCO1/SenC; COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: sli:Slin_5146 electron transporter SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: SCO1/SenC superfamily.
 
  
 0.668
AFK02877.1
PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain; COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR011759:IPR002429; KEGG: dfe:Dfer_3471 cytochrome c oxidase subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane region; SPTR: Cytochrome c oxidase subunit II.
 
    0.644
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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