STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK02898.1GTP-binding protein Era-like-protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain; COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR002917:IPR004044:IPR005225:IPR005662; KEGG: lby:Lbys_2842 gtp-binding protein era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein. (302 aa)    
Predicted Functional Partners:
AFK05339.1
PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: lby:Lbys_0892 ssu ribosomal protein s16p; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16.
 
 
 0.960
AFK04447.1
PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6; COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; InterPro IPR020814:IPR000529; KEGG: lby:Lbys_3020 ssu ribosomal protein s6p; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6.
 
 
  0.952
AFK03170.1
PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle; COGs: COG0049 Ribosomal protein S7; InterPro IPR005717:IPR000235; KEGG: lby:Lbys_1935 ssu ribosomal protein s7p; PFAM: Ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type.
    
 0.944
AFK02530.1
PFAM: Ribosomal protein S9/S16; COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: sli:Slin_4742 ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9.
 
 0.939
AFK02020.1
PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase; COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: Ribosomal RNA adenine dimethylase; InterPro IPR001737:IPR011530:IPR020598; KEGG: dfe:Dfer_5760 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Ribosomal RNA small subunit methyltransferase A; TIGRFAM: Ribosomal RNA adenine dimethylase.
  
 
 
 0.913
AFK01652.1
PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type; COGs: COG0098 Ribosomal protein S5; InterPro IPR005712:IPR013810:IPR005324; KEGG: lby:Lbys_1813 ssu ribosomal protein s5p; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type.
  
 0.901
AFK03038.1
PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle; COGs: COG0051 Ribosomal protein S10; HAMAP: 30S ribosomal protein S10; InterPro IPR005731:IPR001848; KEGG: sli:Slin_5570 ribosomal protein S10; PFAM: Ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10, bacterial.
  
 0.896
AFK03051.1
PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR004410:IPR014043; KEGG: lby:Lbys_2499 (acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; SPTR: (Acyl-carrier-protein) S-malonyltransferase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase.
  
   0.886
AFK05311.1
PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle; COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR005290:IPR000589; KEGG: lby:Lbys_0941 ssu ribosomal protein s15p; PFAM: Ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type.
   
 0.876
AFK02531.1
PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; COGs: COG0052 Ribosomal protein S2; InterPro IPR005706:IPR001865; KEGG: lby:Lbys_2854 ssu ribosomal protein s2p; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid.
  
 0.867
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.