STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03064.1PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; InterPro IPR012910:IPR000531; KEGG: TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor. (769 aa)    
Predicted Functional Partners:
AFK03065.1
KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.880
AFK03732.1
Putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein; InterPro IPR019861; KEGG: lby:Lbys_3484 membrane protein; SPTR: Putative membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes.
  
     0.676
AFK05359.1
KEGG: sli:Slin_0793 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.549
AFK03069.1
KEGG: lby:Lbys_2589 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein.
  
     0.535
AFK02181.1
KEGG: dfe:Dfer_2569 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.533
AFK03513.1
Double-transmembrane region domain protein; PFAM: Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain; InterPro IPR011933:IPR011445; KEGG: dfe:Dfer_5768 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Double-transmembrane region, N-terminal.
  
     0.533
AFK01876.1
KEGG: lby:Lbys_3396 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.526
AFK05203.1
KEGG: sli:Slin_1353 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.524
AFK03647.1
KEGG: lby:Lbys_2722 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.518
AFK02190.1
KEGG: sli:Slin_3443 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
  0.511
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.